Accuracy of 6 commercial systems for identifying clinical Aeromonas isolates☆
Received 3 July 2009; accepted 11 December 2009. published online 18 February 2010.
Abstract
We compared the accuracy of 6 commercial systems for Aeromonas identification by testing 87 clinical isolates in routine conditions, using partial rpoB gene sequencing as the reference standard. The systems were API-20E, API-32GN, the ID-GN card with the Vitek2 system (bioMérieux, Marcy l'Etoile, France), the identification portion of the NFC47 panel (MicroScan Walk/Away system; Siemens Healthcare, Sacramento, CA), ID69 (Phoenix system; BD Diagnostic Systems, Sparks, MD), and GN2 microplates (Omnilog system; Biolog, Hayward, CA), for which 67 (77.1%), 80 (91.9%), 72 (82.7%), 70 (80.5%), 64 (73.5%), and 59 (67.8%) isolates, respectively, were correctly identified at the genus and species level. Confusion with Vibrio affected 6.9% and 16.1% of results obtained with NFC47 and API-20E, respectively. Overall, the accuracy of identification for aeromonads was hampered by outdated databases and taxonomy, weak algorithms, and impractical additional tests. Commercial identification systems should be redesigned to make Aeromonas identification algorithms more robust and to cover infrequent clinical species of this genus.
aCentre Hospitalier du Bassin de Thau, Laboratoire de Biologie, Sète, France
bcolBVH, Collège de Bactériologie, Virologie et Hygiène des Hôpitaux généraux, le Chesnay, Cedex, France
cGroupe d'étude Français sur les Aeromonas (GFA), Cedex, France
dHospices Civils de Lyon, Laboratoire de Bactériologie de l'Hôpital de la Croix-Rousse, Lyon, Cedex, France
eINSERM U851, Université de Lyon, Lyon, Cedex, France
fCentre Hospitalier Antoine Fleyriat, Laboratoire de Microbiologie, Bourg en Bresse, Cedex, France
gCentre Hospitalo-Universitaire Antoine Béclère, Laboratoire de Microbiologie et d'hygiène, Clamart, France
hCentre Hospitalier St Jean, Laboratoire de Microbiologie, Perpignan, France
iUniversité Montpellier 1, EA 3755, Laboratoire de Bactériologie-Virologie-Contrôle microbiologique, Montpellier, Cedex, France
jUniversité de Lyon, CNRS UMR 5557 Ecologie microbienne, Université Lyon 1, Ecole Nationale Vétérinaire de Lyon, France
Corresponding author. Laboratoire de Biologie, Centre Hospitalier du Bassin de Thau, Boulevard Camille Blanc, 34207 Sète, France. Tel.: +33-0-4-67-46-57-82; fax: +33-0-4-67-46-59-84.
☆ The work described in this article was presented, in part, at the 18th European Congress of Clinical Microbiology and Infectious Diseases (Barcelona, 2008).